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R Studio Cheatsheets

• Data Wrangling
• ggplot2

R Shiny- Interactive Web Apps

• Widget Gallery
• User Showcase
• Useful Shiny Packages
• Free Hosting of Apps with Shinyapps.io

Making Great Heatmaps

• Complex Heatmap Vingette
• Tutorial Using gplots

RNA-seq Resources

• Tophat and Clufflinks: Nature Protocols article for sequence alignment with TopHat
• HTSeq: For generating count tables of aligned reads
• Differential Expression Workflow: This short course explores several packages with example data
• DESeq2 Vingette: Exhaustive tutorial on many DESeq2 features

Other Miscellaneous Resources

• Adding p-values to ggplots
• Exploratory Data Analysis Book
• Tricks for the dplyr Filter